STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL13A1Collagen type XIII alpha 1 chain. (751 aa)    
Predicted Functional Partners:
RAB3IL1
Sec2p domain-containing protein.
    
 
 0.697
RPH3A
Rabphilin 3A.
      
 0.582
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.565
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.557
ITGA1
Integrin subunit alpha 1; Belongs to the integrin alpha chain family.
     
 0.553
COL16A1
Collagen type XVI alpha 1 chain.
  
  
0.533
ITGB1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.526
P4HB
Protein disulfide-isomerase.
    
  0.509
P3H2
Prolyl 3-hydroxylase 2.
    
  0.504
P3H3
Prolyl 3-hydroxylase 3.
    
  0.504
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.