Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A0A4W2E935 | DDX20 | A0A4W2E935 | A0A4W2ES41 | Sm domain-containing protein. | DEAD-box helicase 20. | 0.795 |
A0A4W2E935 | GEMIN2 | A0A4W2E935 | A0A4W2CD52 | Sm domain-containing protein. | Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. | 0.945 |
A0A4W2E935 | GEMIN4 | A0A4W2E935 | A0A4W2BQ45 | Sm domain-containing protein. | Gem nuclear organelle associated protein 4. | 0.615 |
A0A4W2E935 | GEMIN5 | A0A4W2E935 | A0A4W2DM67 | Sm domain-containing protein. | Gem nuclear organelle associated protein 5. | 0.648 |
A0A4W2E935 | GEMIN6-2 | A0A4W2E935 | A0A4W2GWN3 | Sm domain-containing protein. | Gem nuclear organelle associated protein 6. | 0.560 |
A0A4W2E935 | GEMIN7 | A0A4W2E935 | A0A4W2E5W5 | Sm domain-containing protein. | Gem nuclear organelle associated protein 7. | 0.428 |
A0A4W2E935 | LOC113878920 | A0A4W2E935 | A0A4W2G7Q8 | Sm domain-containing protein. | Tudor domain-containing protein. | 0.910 |
A0A4W2E935 | SNRPD2 | A0A4W2E935 | A0A4W2GPT6 | Sm domain-containing protein. | Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. | 0.999 |
A0A4W2E935 | SNRPD3 | A0A4W2E935 | A0A4W2HS33 | Sm domain-containing protein. | Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. | 0.999 |
A0A4W2E935 | SNRPE | A0A4W2E935 | A0A4W2FT04 | Sm domain-containing protein. | Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. | 0.991 |
DDX20 | A0A4W2E935 | A0A4W2ES41 | A0A4W2E935 | DEAD-box helicase 20. | Sm domain-containing protein. | 0.795 |
DDX20 | GEMIN2 | A0A4W2ES41 | A0A4W2CD52 | DEAD-box helicase 20. | Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. | 0.933 |
DDX20 | GEMIN4 | A0A4W2ES41 | A0A4W2BQ45 | DEAD-box helicase 20. | Gem nuclear organelle associated protein 4. | 0.995 |
DDX20 | GEMIN5 | A0A4W2ES41 | A0A4W2DM67 | DEAD-box helicase 20. | Gem nuclear organelle associated protein 5. | 0.994 |
DDX20 | GEMIN6-2 | A0A4W2ES41 | A0A4W2GWN3 | DEAD-box helicase 20. | Gem nuclear organelle associated protein 6. | 0.968 |
DDX20 | GEMIN7 | A0A4W2ES41 | A0A4W2E5W5 | DEAD-box helicase 20. | Gem nuclear organelle associated protein 7. | 0.984 |
DDX20 | LOC113878920 | A0A4W2ES41 | A0A4W2G7Q8 | DEAD-box helicase 20. | Tudor domain-containing protein. | 0.990 |
DDX20 | SNRPD2 | A0A4W2ES41 | A0A4W2GPT6 | DEAD-box helicase 20. | Small nuclear ribonucleoprotein Sm D2; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. | 0.791 |
DDX20 | SNRPD3 | A0A4W2ES41 | A0A4W2HS33 | DEAD-box helicase 20. | Small nuclear ribonucleoprotein Sm D3; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone pre-mRNA 3'-end processing. | 0.795 |
DDX20 | SNRPE | A0A4W2ES41 | A0A4W2FT04 | DEAD-box helicase 20. | Small nuclear ribonucleoprotein E; Plays role in pre-mRNA splicing as core component of the SMN- Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. May indirectly play a role in hair development. | 0.742 |
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