STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF39Ring finger protein 39. (416 aa)    
Predicted Functional Partners:
TCF19
Transcription factor 19.
      
 0.730
ZNRD1
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 
 0.688
ABCF1
ATP binding cassette subfamily F member 1.
    
 
 0.680
HIST1H2AC
Histone H2A; Belongs to the histone H2A family.
    
 
 0.531
ZBTB6
Zinc finger and BTB domain containing 6.
   
 0.500
ZBTB8A
Zinc finger and BTB domain containing 8A.
   
 0.498
ZBTB5
Zinc finger and BTB domain containing 5.
   
 0.494
FAR1
Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols.
      
 0.491
KBTBD3
Kelch repeat and BTB domain containing 3.
    
 
 0.490
A0A4W2DMF8
JmjC domain-containing protein.
      
 0.483
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.