STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTRAFRNA transcription, translation and transport factor. (263 aa)    
Predicted Functional Partners:
DDX1
DEAD-box helicase 1.
   
 0.968
FAM98B
Family with sequence similarity 98 member B.
    
 0.943
RTCB
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
   
 0.942
FAM98A
Family with sequence similarity 98 member A.
    
 
 0.912
C2orf49
Chromosome 2 open reading frame 49.
    
 0.870
SLFNL1
Schlafen like 1.
   
 0.854
FAM98C
Family with sequence similarity 98 member C.
    
 
 0.751
LSM12
LSM12 homolog.
    
 
 0.663
HNRNPDL
Heterogeneous nuclear ribonucleoprotein D like.
   
  
 0.635
ELAVL4
ELAV-like protein; Belongs to the RRM elav family.
   
  
 0.609
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.