A0A4W2CTI4 protein (Bos indicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A4W2CTI4

Transcription factor BTF3; Belongs to the NAC-beta family. (157 aa)

Predicted Functional Partners:

NACA

0.936

RPL32

0.903

RPL24

0.901

RPL29

0.900

A0A4W2BTS8

0.890

RPL19

0.878

RPL34

0.875

RPL23

0.865

A0A4W2II62

0.862

A0A4W2CT51

0.860

Your Current Organism:

Bos indicus

NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A4W2BTS8	A0A4W2CT51	A0A4W2BTS8	A0A4W2CT51	KRAB domain-containing protein.	NAC-A/B domain-containing protein.	0.893
A0A4W2BTS8	A0A4W2CTI4	A0A4W2BTS8	A0A4W2CTI4	KRAB domain-containing protein.	Transcription factor BTF3; Belongs to the NAC-beta family.	0.890
A0A4W2BTS8	A0A4W2II62	A0A4W2BTS8	A0A4W2II62	KRAB domain-containing protein.	Uncharacterized protein.	0.999
A0A4W2BTS8	NACA	A0A4W2BTS8	A0A4W2CPB2	KRAB domain-containing protein.	NAC-A/B domain-containing protein.	0.982
A0A4W2BTS8	RPL19	A0A4W2BTS8	A0A4W2E0U9	KRAB domain-containing protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
A0A4W2BTS8	RPL23	A0A4W2BTS8	A0A4W2H8J2	KRAB domain-containing protein.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.999
A0A4W2BTS8	RPL24	A0A4W2BTS8	A0A4W2G516	KRAB domain-containing protein.	Ribosomal protein L24.	0.999
A0A4W2BTS8	RPL29	A0A4W2BTS8	A0A4W2FBY0	KRAB domain-containing protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
A0A4W2BTS8	RPL32	A0A4W2BTS8	A0A4W2DUT3	KRAB domain-containing protein.	Ribosomal protein L32.	0.999
A0A4W2BTS8	RPL34	A0A4W2BTS8	A0A4W2E1F3	KRAB domain-containing protein.	Ribosomal protein L34.	0.999
A0A4W2CT51	A0A4W2BTS8	A0A4W2CT51	A0A4W2BTS8	NAC-A/B domain-containing protein.	KRAB domain-containing protein.	0.893
A0A4W2CT51	A0A4W2CTI4	A0A4W2CT51	A0A4W2CTI4	NAC-A/B domain-containing protein.	Transcription factor BTF3; Belongs to the NAC-beta family.	0.860
A0A4W2CT51	A0A4W2II62	A0A4W2CT51	A0A4W2II62	NAC-A/B domain-containing protein.	Uncharacterized protein.	0.813
A0A4W2CT51	RPL19	A0A4W2CT51	A0A4W2E0U9	NAC-A/B domain-containing protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.905
A0A4W2CT51	RPL23	A0A4W2CT51	A0A4W2H8J2	NAC-A/B domain-containing protein.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.901
A0A4W2CT51	RPL24	A0A4W2CT51	A0A4W2G516	NAC-A/B domain-containing protein.	Ribosomal protein L24.	0.903
A0A4W2CT51	RPL29	A0A4W2CT51	A0A4W2FBY0	NAC-A/B domain-containing protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.855
A0A4W2CT51	RPL32	A0A4W2CT51	A0A4W2DUT3	NAC-A/B domain-containing protein.	Ribosomal protein L32.	0.893
A0A4W2CT51	RPL34	A0A4W2CT51	A0A4W2E1F3	NAC-A/B domain-containing protein.	Ribosomal protein L34.	0.896
A0A4W2CTI4	A0A4W2BTS8	A0A4W2CTI4	A0A4W2BTS8	Transcription factor BTF3; Belongs to the NAC-beta family.	KRAB domain-containing protein.	0.890

page 1 of 6

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About