Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A0A4W2D3W4 | A0A4W2E0Q1 | A0A4W2D3W4 | A0A4W2E0Q1 | Ubiquitin-like domain-containing protein. | Ubiquitin-like domain-containing protein. | 0.991 |
A0A4W2D3W4 | A0A4W2E367 | A0A4W2D3W4 | A0A4W2E367 | Ubiquitin-like domain-containing protein. | Histone H2A; Belongs to the histone H2A family. | 0.569 |
A0A4W2D3W4 | BRCA1 | A0A4W2D3W4 | A0A4W2EC46 | Ubiquitin-like domain-containing protein. | BRCA1 DNA repair associated. | 0.475 |
A0A4W2D3W4 | PIAS4 | A0A4W2D3W4 | A0A4W2D5V0 | Ubiquitin-like domain-containing protein. | Protein inhibitor of activated STAT 4. | 0.422 |
A0A4W2D3W4 | RNF168 | A0A4W2D3W4 | A0A4W2D4V3 | Ubiquitin-like domain-containing protein. | E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recrui [...] | 0.802 |
A0A4W2D3W4 | RNF8 | A0A4W2D3W4 | A0A4W2HHC3 | Ubiquitin-like domain-containing protein. | E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] | 0.933 |
A0A4W2D3W4 | TP53BP1 | A0A4W2D3W4 | A0A4W2DZN3 | Ubiquitin-like domain-containing protein. | Tumor protein p53 binding protein 1. | 0.777 |
A0A4W2D3W4 | UBC | A0A4W2D3W4 | A0A4W2CUP5 | Ubiquitin-like domain-containing protein. | Ubiquitin C. | 0.997 |
A0A4W2E0Q1 | A0A4W2D3W4 | A0A4W2E0Q1 | A0A4W2D3W4 | Ubiquitin-like domain-containing protein. | Ubiquitin-like domain-containing protein. | 0.991 |
A0A4W2E0Q1 | A0A4W2E367 | A0A4W2E0Q1 | A0A4W2E367 | Ubiquitin-like domain-containing protein. | Histone H2A; Belongs to the histone H2A family. | 0.600 |
A0A4W2E0Q1 | BRCA1 | A0A4W2E0Q1 | A0A4W2EC46 | Ubiquitin-like domain-containing protein. | BRCA1 DNA repair associated. | 0.544 |
A0A4W2E0Q1 | PIAS4 | A0A4W2E0Q1 | A0A4W2D5V0 | Ubiquitin-like domain-containing protein. | Protein inhibitor of activated STAT 4. | 0.476 |
A0A4W2E0Q1 | RNF168 | A0A4W2E0Q1 | A0A4W2D4V3 | Ubiquitin-like domain-containing protein. | E3 ubiquitin-protein ligase RNF168; E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recrui [...] | 0.823 |
A0A4W2E0Q1 | RNF8 | A0A4W2E0Q1 | A0A4W2HHC3 | Ubiquitin-like domain-containing protein. | E3 ubiquitin-protein ligase RNF8; E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53 [...] | 0.989 |
A0A4W2E0Q1 | RPS27A | A0A4W2E0Q1 | A0A4W2CFE2 | Ubiquitin-like domain-containing protein. | Ubiquitin-like domain-containing protein. | 0.991 |
A0A4W2E0Q1 | TP53BP1 | A0A4W2E0Q1 | A0A4W2DZN3 | Ubiquitin-like domain-containing protein. | Tumor protein p53 binding protein 1. | 0.736 |
A0A4W2E367 | A0A4W2D3W4 | A0A4W2E367 | A0A4W2D3W4 | Histone H2A; Belongs to the histone H2A family. | Ubiquitin-like domain-containing protein. | 0.569 |
A0A4W2E367 | A0A4W2E0Q1 | A0A4W2E367 | A0A4W2E0Q1 | Histone H2A; Belongs to the histone H2A family. | Ubiquitin-like domain-containing protein. | 0.600 |
A0A4W2E367 | BRCA1 | A0A4W2E367 | A0A4W2EC46 | Histone H2A; Belongs to the histone H2A family. | BRCA1 DNA repair associated. | 0.841 |
A0A4W2E367 | MDC1 | A0A4W2E367 | A0A4W2C526 | Histone H2A; Belongs to the histone H2A family. | BRCT domain-containing protein. | 0.894 |
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