STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FASTKD1FAST kinase domains 1. (832 aa)    
Predicted Functional Partners:
KDM1B
Lysine demethylase 1B.
      
 0.588
FAT2
FAT atypical cadherin 2.
      
 0.572
RPUSD3
RNA pseudouridine synthase D3.
      
 0.554
RPUSD4
RNA pseudouridine synthase D4.
      
 0.497
KIAA1211L
KIAA1211 like.
      
 0.497
MRM1
Mitochondrial rRNA methyltransferase 1.
   
  
 0.495
MRPL47
Mitochondrial ribosomal protein L47.
   
  
 0.494
ZC3H3
Zinc finger CCCH-type containing 3.
   
  
 0.489
MTPAP
Mitochondrial poly(A) polymerase.
      
 0.461
CNKSR1
Connector enhancer of kinase suppressor of Ras 1.
      
 0.461
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
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