STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KDM8Lysine demethylase 8. (406 aa)    
Predicted Functional Partners:
RCCD1
RCC1 domain containing 1.
    
 
 0.730
RABEP2
Rabaptin, RAB GTPase binding effector protein 2.
      
 0.723
PMPCA
Peptidase, mitochondrial processing alpha subunit; Belongs to the peptidase M16 family.
      
 0.600
MTA3
Metastasis associated 1 family member 3.
      
 0.583
USP12
Ubiquitin specific peptidase 12; Belongs to the peptidase C19 family.
      
 0.569
A0A4W2D7S8
Uncharacterized protein.
    
   0.541
RPS6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
   0.541
A0A4W2ETA9
Uncharacterized protein.
    
   0.541
CAPN7
Calpain 7; Belongs to the peptidase C2 family.
   
 
 0.507
AUNIP
Aurora kinase A and ninein interacting protein.
      
 0.497
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.