STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A4W2E389Ubiquitin-like domain-containing protein. (73 aa)    
Predicted Functional Partners:
MFAP1
Microfibril associated protein 1.
    
 0.902
PRPF38A
Pre-mRNA processing factor 38A.
    
 0.897
ZMAT2
Zinc finger matrin-type 2.
    
 0.869
CDC40
Cell division cycle 40.
    
 0.854
SMU1
SMU1 DNA replication regulator and spliceosomal factor.
    
 0.833
PRPF6
Pre-mRNA processing factor 6.
    
 0.829
WBP4
WW domain binding protein 4.
    
  0.827
TCERG1
Transcription elongation regulator 1.
    
  0.827
SRRM1
Serine and arginine repetitive matrix 1.
    
  0.827
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.797
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.