STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTX1Orthodenticle homeobox 1. (355 aa)    
Predicted Functional Partners:
A0A4W2H6U5
Uncharacterized protein.
    
0.738
TBR1
T-box brain transcription factor 1.
   
 
 0.520
A0A4W2CEC2
Homeobox domain-containing protein.
   
  
0.498
FOXG1
Forkhead box G1.
   
  
 0.493
SIX3
SIX homeobox 3.
   
 
 0.477
RHO
Rhodopsin.
   
  
 0.470
TGM7
Transglutaminase 7.
      
 0.459
FEZF2
FEZ family zinc finger 2.
    
 
 0.424
SATB2
DNA-binding protein SATB.
      
 0.424
LHFPL5
LHFPL tetraspan subfamily member 5.
      
 0.422
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.