STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TLX1T cell leukemia homeobox 1. (335 aa)    
Predicted Functional Partners:
LHX5
LIM homeobox 5.
    
 
 0.621
LOC113888926
Homeobox domain-containing protein.
    
 
0.522
LYL1
LYL1 basic helix-loop-helix family member.
      
 0.499
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
      
 0.487
LHX1
LIM homeobox 1.
    
 
 0.479
PTF1A
Pancreas associated transcription factor 1a.
      
 0.467
SLC6A5
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
      
 0.465
LMX1B
Uncharacterized protein.
    
 
 0.464
LMO2
LIM domain only 2.
    
 
 0.464
LMX1A
LIM homeobox transcription factor 1 alpha.
    
 
 0.464
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.