STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF1UPF1 RNA helicase and ATPase. (1127 aa)    
Predicted Functional Partners:
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
    
 0.999
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.999
SMG7
SMG7 nonsense mediated mRNA decay factor.
   
 0.992
SMG6
SMG6 nonsense mediated mRNA decay factor.
   
 0.989
CASC3
CASC3 exon junction complex subunit.
    
 0.980
A0A4W2CTS9
Smg4_UPF3 domain-containing protein.
    
 0.980
A0A4W2DX60
Smg4_UPF3 domain-containing protein.
    
 0.974
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 0.969
PABPC1
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.968
A0A4W2CQS9
Uncharacterized protein.
   
 0.955
Your Current Organism:
Bos indicus
NCBI taxonomy Id: 30522
Other names: B. indicus x Bos taurus, Bos indicus x Bos taurus, Bos primigenius indicus x Bos primigenius taurus, Bos taurus indicus x Bos taurus taurus, hybrid cattle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.