Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BCO2Beta-carotene oxygenase 2. (578 aa)    
Predicted Functional Partners:
ASIP
Vicugna pacos agouti signaling protein (ASIP), mRNA.
      
 0.768
TYRP1
Tyrosinase related protein 1.
     
 0.735
MITF
Melanocyte inducing transcription factor.
      
 0.703
TBC1D22B
TBC1 domain family member 22B.
      
 0.688
SPR
Sepiapterin reductase.
      
 0.686
RARS1
arginyl-tRNA synthetase 1.
      
 0.685
KBTBD12
Kelch repeat and BTB domain containing 12.
      
 0.683
PIBF1
Progesterone immunomodulatory binding factor 1.
      
 0.674
SKP1
S-phase kinase associated protein 1.
    
 0.646
ENSVPAP00000009418
annotation not available
      
 0.637
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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