Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PPIHPeptidylprolyl isomerase H. (155 aa)    
Predicted Functional Partners:
PRPF3
pre-mRNA processing factor 3.
    
 0.997
PRPF4
pre-mRNA processing factor 4.
    
 0.996
SNU13
Small nuclear ribonucleoprotein 13.
  
 0.989
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.976
ENSVPAP00000009303
annotation not available
    
 
 0.957
LSM2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.952
LSM3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.931
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.929
ENSVPAP00000010392
annotation not available
   
  0.926
ENSVPAP00000005625
annotation not available
   
 0.923
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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