STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DSEDermatan sulfate epimerase. (958 aa)    
Predicted Functional Partners:
DDX50
DExD-box helicase 50.
      
 0.733
CSGALNACT1
Chondroitin sulfate N-acetylgalactosaminyltransferase 1.
      
 0.692
REV1
REV1 DNA directed polymerase.
      
 0.692
CHSY3
Chondroitin sulfate synthase 3.
      
 0.688
CHST11
Carbohydrate sulfotransferase 11.
      
 0.685
STOX1
Storkhead box 1.
      
 0.674
SYT1
Synaptotagmin 1.
      
 0.615
CSGALNACT2
Chondroitin sulfate N-acetylgalactosaminyltransferase 2.
      
 0.615
TACR2
Tachykinin receptor 2.
      
 0.612
TPPP
Tubulin polymerization promoting protein.
      
 0.593
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.