Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DPYDDihydropyrimidine dehydrogenase. (1012 aa)    
Predicted Functional Partners:
UMPS
Uridine monophosphate synthetase.
  
 0.997
GOLT1B
Golgi transport 1B.
  
 
 0.960
TMEM116
Transmembrane protein 116.
  
 0.934
CPS1
Carbamoyl-phosphate synthase 1.
  
 0.934
ENSVPAP00000009579
annotation not available
  
 0.926
DPYS
Dihydropyrimidinase.
  
 0.926
DPYSL3
Dihydropyrimidinase like 3.
  
 0.897
DPYSL5
Dihydropyrimidinase like 5.
  
 0.897
ENSVPAP00000003380
annotation not available
  
 0.897
CYB5R4
Cytochrome b5 reductase 4.
  
 0.897
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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