Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NPAS3Neuronal PAS domain protein 3. (907 aa)    
Predicted Functional Partners:
ARNT
Aryl hydrocarbon receptor nuclear translocator.
    
 0.970
ENSVPAP00000003006
annotation not available
    
 0.940
UBXN7
UBX domain protein 7.
    
  0.924
POU3F4
POU class 3 homeobox 4.
    
 0.882
ENSVPAP00000001024
annotation not available
    
 0.865
EGLN1
Egl-9 family hypoxia inducible factor 1.
    
 0.865
ELOC
Elongin C.
    
 0.826
CUL2
Cullin 2.
    
 0.817
NR3C2
Nuclear receptor subfamily 3 group C member 2.
   
 
 0.768
CLOCK
Clock circadian regulator.
    
0.767
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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