Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ITGA1Integrin subunit alpha 1. (1180 aa)    
Predicted Functional Partners:
ITGB1
Integrin subunit beta 1.
   
 0.999
ENSVPAP00000004726
annotation not available
   
 0.997
ENSVPAP00000003830
annotation not available
   
 0.993
TLN2
Talin 2.
    
 0.992
ITGB6
Integrin subunit beta 6.
   
 0.983
COL4A6
Collagen type IV alpha 6 chain.
   
 0.979
COL4A4
Collagen type IV alpha 4 chain.
    
 0.968
ENSVPAP00000002137
annotation not available
    
 0.959
ENSVPAP00000008949
annotation not available
    
 0.959
COL1A2
Collagen type I alpha 2 chain.
    
 0.958
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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