Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNX16Sorting nexin 16. (344 aa)    
Predicted Functional Partners:
PPA1
Inorganic pyrophosphatase 1.
    
   0.851
KIF6
Kinesin family member 6.
    
  0.803
SNX1
Sorting nexin 1.
      
 0.791
PITX2
Paired like homeodomain 2.
      
 0.726
ACVRL1
Activin A receptor like type 1.
    
 0.721
SNX15
Sorting nexin 15.
    
 0.699
PFKFB2
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2.
      
 0.698
SDAD1
SDA1 domain containing 1.
      
 0.666
YIPF4
Yip1 domain family member 4.
      
 0.660
FCHSD2
FCH and double SH3 domains 2.
    
 
 0.656
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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