RNF170 protein (Vicugna pacos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RNF170

Ring finger protein 170. (260 aa)

Predicted Functional Partners:

ERLIN2

0.990

ERLIN1

0.989

ITPR1

0.869

CGRRF1

0.805

TMUB2

0.770

UBE2J1

0.749

ENSVPAP00000001912

0.722

ENSVPAP00000008719

0.683

HERPUD2

0.683

ENSVPAP00000003360

0.672

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CGRRF1	ENSVPAP00000001912	ENSVPAP00000003527	ENSVPAP00000001912	Cell growth regulator with ring finger domain 1.	annotation not available	0.681
CGRRF1	ENSVPAP00000008719	ENSVPAP00000003527	ENSVPAP00000008719	Cell growth regulator with ring finger domain 1.	annotation not available	0.681
CGRRF1	RNF170	ENSVPAP00000003527	ENSVPAP00000001067	Cell growth regulator with ring finger domain 1.	Ring finger protein 170.	0.805
CGRRF1	UBE2J1	ENSVPAP00000003527	ENSVPAP00000003883	Cell growth regulator with ring finger domain 1.	Ubiquitin conjugating enzyme E2 J1.	0.559
ENSVPAP00000001912	CGRRF1	ENSVPAP00000001912	ENSVPAP00000003527	annotation not available	Cell growth regulator with ring finger domain 1.	0.681
ENSVPAP00000001912	ERLIN1	ENSVPAP00000001912	ENSVPAP00000009389	annotation not available	ER lipid raft associated 1.	0.610
ENSVPAP00000001912	HERPUD2	ENSVPAP00000001912	ENSVPAP00000009311	annotation not available	HERPUD family member 2.	0.721
ENSVPAP00000001912	RNF170	ENSVPAP00000001912	ENSVPAP00000001067	annotation not available	Ring finger protein 170.	0.722
ENSVPAP00000001912	TMUB2	ENSVPAP00000001912	ENSVPAP00000010936	annotation not available	Transmembrane and ubiquitin like domain containing 2.	0.612
ENSVPAP00000001912	UBE2J1	ENSVPAP00000001912	ENSVPAP00000003883	annotation not available	Ubiquitin conjugating enzyme E2 J1.	0.610
ENSVPAP00000003360	RNF170	ENSVPAP00000003360	ENSVPAP00000001067	annotation not available	Ring finger protein 170.	0.672
ENSVPAP00000008719	CGRRF1	ENSVPAP00000008719	ENSVPAP00000003527	annotation not available	Cell growth regulator with ring finger domain 1.	0.681
ENSVPAP00000008719	RNF170	ENSVPAP00000008719	ENSVPAP00000001067	annotation not available	Ring finger protein 170.	0.683
ERLIN1	ENSVPAP00000001912	ENSVPAP00000009389	ENSVPAP00000001912	ER lipid raft associated 1.	annotation not available	0.610
ERLIN1	ERLIN2	ENSVPAP00000009389	ENSVPAP00000002045	ER lipid raft associated 1.	ER lipid raft associated 2.	0.999
ERLIN1	HERPUD2	ENSVPAP00000009389	ENSVPAP00000009311	ER lipid raft associated 1.	HERPUD family member 2.	0.615
ERLIN1	ITPR1	ENSVPAP00000009389	ENSVPAP00000006928	ER lipid raft associated 1.	Inositol 1,4,5-trisphosphate receptor type 1.	0.872
ERLIN1	RNF170	ENSVPAP00000009389	ENSVPAP00000001067	ER lipid raft associated 1.	Ring finger protein 170.	0.989
ERLIN1	TMUB2	ENSVPAP00000009389	ENSVPAP00000010936	ER lipid raft associated 1.	Transmembrane and ubiquitin like domain containing 2.	0.958
ERLIN2	ERLIN1	ENSVPAP00000002045	ENSVPAP00000009389	ER lipid raft associated 2.	ER lipid raft associated 1.	0.999