URB1 protein (Vicugna pacos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

URB1

URB1 ribosome biogenesis homolog. (2263 aa)

Predicted Functional Partners:

ENSVPAP00000010401

0.986

CEBPZ

0.976

PDCD11

0.976

ENSVPAP00000006523

0.951

RBM28

0.943

NSUN6

0.940

POLR1B

0.929

NOP58

0.927

ENSVPAP00000004213

0.924

ENSVPAP00000003015

0.917

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEBPZ	ENSVPAP00000003015	ENSVPAP00000003060	ENSVPAP00000003015	CCAAT enhancer binding protein zeta.	annotation not available	0.974
CEBPZ	ENSVPAP00000004213	ENSVPAP00000003060	ENSVPAP00000004213	CCAAT enhancer binding protein zeta.	annotation not available	0.978
CEBPZ	ENSVPAP00000006523	ENSVPAP00000003060	ENSVPAP00000006523	CCAAT enhancer binding protein zeta.	annotation not available	0.985
CEBPZ	ENSVPAP00000010401	ENSVPAP00000003060	ENSVPAP00000010401	CCAAT enhancer binding protein zeta.	annotation not available	0.985
CEBPZ	NOP58	ENSVPAP00000003060	ENSVPAP00000006236	CCAAT enhancer binding protein zeta.	NOP58 ribonucleoprotein.	0.987
CEBPZ	NSUN6	ENSVPAP00000003060	ENSVPAP00000009439	CCAAT enhancer binding protein zeta.	NOP2/Sun RNA methyltransferase 6.	0.991
CEBPZ	PDCD11	ENSVPAP00000003060	ENSVPAP00000006886	CCAAT enhancer binding protein zeta.	Programmed cell death 11.	0.995
CEBPZ	POLR1B	ENSVPAP00000003060	ENSVPAP00000010348	CCAAT enhancer binding protein zeta.	RNA polymerase I subunit B.	0.899
CEBPZ	RBM28	ENSVPAP00000003060	ENSVPAP00000007724	CCAAT enhancer binding protein zeta.	RNA binding motif protein 28.	0.993
CEBPZ	URB1	ENSVPAP00000003060	ENSVPAP00000001076	CCAAT enhancer binding protein zeta.	URB1 ribosome biogenesis homolog.	0.976
ENSVPAP00000003015	CEBPZ	ENSVPAP00000003015	ENSVPAP00000003060	annotation not available	CCAAT enhancer binding protein zeta.	0.974
ENSVPAP00000003015	ENSVPAP00000004213	ENSVPAP00000003015	ENSVPAP00000004213	annotation not available	annotation not available	0.759
ENSVPAP00000003015	ENSVPAP00000006523	ENSVPAP00000003015	ENSVPAP00000006523	annotation not available	annotation not available	0.932
ENSVPAP00000003015	ENSVPAP00000010401	ENSVPAP00000003015	ENSVPAP00000010401	annotation not available	annotation not available	0.965
ENSVPAP00000003015	NOP58	ENSVPAP00000003015	ENSVPAP00000006236	annotation not available	NOP58 ribonucleoprotein.	0.997
ENSVPAP00000003015	NSUN6	ENSVPAP00000003015	ENSVPAP00000009439	annotation not available	NOP2/Sun RNA methyltransferase 6.	0.899
ENSVPAP00000003015	PDCD11	ENSVPAP00000003015	ENSVPAP00000006886	annotation not available	Programmed cell death 11.	0.988
ENSVPAP00000003015	POLR1B	ENSVPAP00000003015	ENSVPAP00000010348	annotation not available	RNA polymerase I subunit B.	0.837
ENSVPAP00000003015	RBM28	ENSVPAP00000003015	ENSVPAP00000007724	annotation not available	RNA binding motif protein 28.	0.978
ENSVPAP00000003015	URB1	ENSVPAP00000003015	ENSVPAP00000001076	annotation not available	URB1 ribosome biogenesis homolog.	0.917