Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000001082annotation not available (165 aa)    
Predicted Functional Partners:
SF3A3
Splicing factor 3a subunit 3.
   
 0.941
ENSVPAP00000010392
annotation not available
   
 0.936
SNRPD3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.935
SF3B3
Splicing factor 3b subunit 3.
    
 0.925
SF3B1
Splicing factor 3b subunit 1.
   
 0.924
SF3B4
Splicing factor 3b subunit 4.
   
 0.909
SF3B2
Splicing factor 3b subunit 2.
   
 0.907
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.906
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
   
 0.903
SF3B5
Splicing factor 3b subunit 5.
   
 0.900
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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