Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VLDLRVery low density lipoprotein receptor. (843 aa)    
Predicted Functional Partners:
RELN
Reelin.
    
 0.999
DAB1
DAB adaptor protein 1.
    
 0.998
MYLIP
Myosin regulatory light chain interacting protein.
    
 0.945
APOB
Apolipoprotein B.
    
 0.920
SYT1
Synaptotagmin 1.
    
 0.879
SH3KBP1
SH3 domain containing kinase binding protein 1.
     
 0.871
ENSVPAP00000002306
annotation not available
    
 0.716
FYN
FYN proto-oncogene, Src family tyrosine kinase.
    
 0.716
DAB2
DAB adaptor protein 2.
    
 0.711
JAK2
Janus kinase 2.
    
 0.706
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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