Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMGN5High mobility group nucleosome binding domain 5. (282 aa)    
Predicted Functional Partners:
ENSVPAP00000000717
annotation not available
   
  
 0.634
ENSVPAP00000007516
annotation not available
   
  
 0.634
SSB
Small RNA binding exonuclease protection factor La.
    
   0.632
ENSVPAP00000005575
annotation not available
  
   
 0.612
ENSVPAP00000004838
annotation not available
    
 
 0.598
TCF19
Transcription factor 19.
      
 0.522
PHF10
PHD finger protein 10.
      
 0.522
HMGN3
High mobility group nucleosomal binding domain 3.
      
 0.498
WFDC11
WAP four-disulfide core domain 11.
  
     0.493
KCTD2
Potassium channel tetramerization domain containing 2.
    
  0.485
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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