STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UFL1UFM1 specific ligase 1. (790 aa)    
Predicted Functional Partners:
ENSVPAP00000002402
annotation not available
   
 
 0.997
DDRGK1
DDRGK domain containing 1.
    
 
 0.988
UFM1
Ubiquitin fold modifier 1.
   
 
 0.913
UBA5
Ubiquitin like modifier activating enzyme 5.
   
 
 0.862
LTN1
Listerin E3 ubiquitin protein ligase 1.
   
 0.861
EIF6
Eukaryotic translation initiation factor 6.
    
 
 0.850
RPL12
Ribosomal protein L12.
    
 
 0.818
RPL29
Ribosomal protein L29.
    
 
 0.810
NEMF
Nuclear export mediator factor.
   
 
 0.802
RPL30
Ribosomal protein L30.
    
 
 0.792
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.