Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMS22LMMS22 like, DNA repair protein. (1195 aa)    
Predicted Functional Partners:
SSRP1
Structure specific recognition protein 1.
    
 
 0.965
ASF1A
Anti-silencing function 1A histone chaperone.
   
 
 0.932
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 
 0.862
MCM6
Minichromosome maintenance complex component 6.
   
 
 0.820
BRCA1
BRCA1 DNA repair associated.
   
 
 0.764
BARD1
BRCA1 associated RING domain 1.
   
 
 0.759
TAMM41
TAM41 mitochondrial translocator assembly and maintenance homolog.
      
 0.758
GJA10
Gap junction protein alpha 10.
      
 0.726
ENSVPAP00000000377
annotation not available
   
 
 0.707
KLHL32
Kelch like family member 32.
      
 0.707
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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