Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBFOX1RNA binding fox-1 homolog 1. (418 aa)    
Predicted Functional Partners:
RBFOX2
RNA binding fox-1 homolog 2.
   
   0.991
RBPMS
RNA binding protein, mRNA processing factor.
   
 
 0.922
QKI
QKI, KH domain containing RNA binding.
   
 
 0.916
ELAVL2
ELAV like RNA binding protein 2.
  
 
 0.835
ENSVPAP00000005367
annotation not available
    
   0.777
SNRPC
Small nuclear ribonucleoprotein polypeptide C.
    
 
 0.772
PTBP2
Polypyrimidine tract binding protein 2.
    
 
 0.761
ELAVL4
ELAV like RNA binding protein 4.
  
 
 0.752
ENSVPAP00000005365
annotation not available
    
 
 0.706
HNRNPH1
Heterogeneous nuclear ribonucleoprotein H1.
    
 0.649
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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