Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APTXAprataxin. (343 aa)    
Predicted Functional Partners:
TDP1
tyrosyl-DNA phosphodiesterase 1.
    
 
 0.938
ENSVPAP00000005493
annotation not available
   
 
 0.867
LIG3
DNA ligase 3.
    
 
 0.849
SETX
Senataxin.
   
  
 0.760
POLB
DNA polymerase beta.
   
 
 0.743
PARP1
poly(ADP-ribose) polymerase 1.
   
 
 0.724
LIG4
DNA ligase 4.
    
 
 0.718
PNKP
Polynucleotide kinase 3'-phosphatase.
    
 
 0.713
APEX1
Apurinic/apyrimidinic endodeoxyribonuclease 1.
    
 
 0.690
SOCS2
Suppressor of cytokine signaling 2.
      
 0.688
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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