NFX1 protein (Vicugna pacos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

NFX1

Nuclear transcription factor, X-box binding 1. (1011 aa)

Predicted Functional Partners:

ENSVPAP00000001074

0.874

SYNCRIP

0.852

DDX5

0.789

YBX1

0.786

RPL6

0.782

ENSVPAP00000005209

0.775

ENSVPAP00000000119

0.774

HNRNPM

0.774

RPL13A

0.774

ENSVPAP00000008802

0.774

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX5	ENSVPAP00000001074	ENSVPAP00000010017	ENSVPAP00000001074	DEAD-box helicase 5.	annotation not available	0.422
DDX5	HNRNPM	ENSVPAP00000010017	ENSVPAP00000003916	DEAD-box helicase 5.	Heterogeneous nuclear ribonucleoprotein M.	0.930
DDX5	NFX1	ENSVPAP00000010017	ENSVPAP00000001205	DEAD-box helicase 5.	Nuclear transcription factor, X-box binding 1.	0.789
DDX5	RPL13A	ENSVPAP00000010017	ENSVPAP00000006096	DEAD-box helicase 5.	Ribosomal protein L13a.	0.459
DDX5	RPL6	ENSVPAP00000010017	ENSVPAP00000006509	DEAD-box helicase 5.	Ribosomal protein L6.	0.462
DDX5	SYNCRIP	ENSVPAP00000010017	ENSVPAP00000000977	DEAD-box helicase 5.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.854
DDX5	YBX1	ENSVPAP00000010017	ENSVPAP00000000062	DEAD-box helicase 5.	Y-box binding protein 1.	0.837
ENSVPAP00000000119	ENSVPAP00000001074	ENSVPAP00000000119	ENSVPAP00000001074	annotation not available	annotation not available	0.447
ENSVPAP00000000119	NFX1	ENSVPAP00000000119	ENSVPAP00000001205	annotation not available	Nuclear transcription factor, X-box binding 1.	0.774
ENSVPAP00000001074	DDX5	ENSVPAP00000001074	ENSVPAP00000010017	annotation not available	DEAD-box helicase 5.	0.422
ENSVPAP00000001074	ENSVPAP00000000119	ENSVPAP00000001074	ENSVPAP00000000119	annotation not available	annotation not available	0.447
ENSVPAP00000001074	NFX1	ENSVPAP00000001074	ENSVPAP00000001205	annotation not available	Nuclear transcription factor, X-box binding 1.	0.874
ENSVPAP00000001074	YBX1	ENSVPAP00000001074	ENSVPAP00000000062	annotation not available	Y-box binding protein 1.	0.914
ENSVPAP00000005209	NFX1	ENSVPAP00000005209	ENSVPAP00000001205	annotation not available	Nuclear transcription factor, X-box binding 1.	0.775
ENSVPAP00000008802	NFX1	ENSVPAP00000008802	ENSVPAP00000001205	annotation not available	Nuclear transcription factor, X-box binding 1.	0.774
ENSVPAP00000008802	RPL13A	ENSVPAP00000008802	ENSVPAP00000006096	annotation not available	Ribosomal protein L13a.	0.996
ENSVPAP00000008802	RPL6	ENSVPAP00000008802	ENSVPAP00000006509	annotation not available	Ribosomal protein L6.	0.999
ENSVPAP00000008802	YBX1	ENSVPAP00000008802	ENSVPAP00000000062	annotation not available	Y-box binding protein 1.	0.858
HNRNPM	DDX5	ENSVPAP00000003916	ENSVPAP00000010017	Heterogeneous nuclear ribonucleoprotein M.	DEAD-box helicase 5.	0.930
HNRNPM	NFX1	ENSVPAP00000003916	ENSVPAP00000001205	Heterogeneous nuclear ribonucleoprotein M.	Nuclear transcription factor, X-box binding 1.	0.774