Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000001208annotation not available (463 aa)    
Predicted Functional Partners:
CAPNS1
Calpain small subunit 1.
 
 
 0.957
CAST
Calpastatin.
   
 0.926
TTN
Titin.
   
 0.810
ENSVPAP00000003252
annotation not available
   
 0.662
PPP1CC
Protein phosphatase 1 catalytic subunit gamma.
    
  0.623
NEB
Nebulin.
   
  
 0.593
CAPN6
Calpain 6.
    
 0.590
MYPN
Myopalladin.
   
 0.570
AHI1
Abelson helper integration site 1.
    
 0.559
XPO1
Exportin 1.
     
 0.558
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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