ARL6IP5 protein (Vicugna pacos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ARL6IP5

ADP ribosylation factor like GTPase 6 interacting protein 5. (188 aa)

Predicted Functional Partners:

DERL1

0.901

DERL2

0.887

RTN1

0.808

SLC1A1

0.795

RETREG3

0.769

RTN3

0.768

ENSVPAP00000000363

0.755

FAM241B

0.725

ENSVPAP00000009322

0.685

VAMP4

0.670

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARL6IP5	DERL1	ENSVPAP00000001258	ENSVPAP00000010971	ADP ribosylation factor like GTPase 6 interacting protein 5.	Derlin 1.	0.901
ARL6IP5	DERL2	ENSVPAP00000001258	ENSVPAP00000011644	ADP ribosylation factor like GTPase 6 interacting protein 5.	Derlin 2.	0.887
ARL6IP5	ENSVPAP00000000363	ENSVPAP00000001258	ENSVPAP00000000363	ADP ribosylation factor like GTPase 6 interacting protein 5.	annotation not available	0.755
ARL6IP5	ENSVPAP00000009322	ENSVPAP00000001258	ENSVPAP00000009322	ADP ribosylation factor like GTPase 6 interacting protein 5.	annotation not available	0.685
ARL6IP5	FAM241B	ENSVPAP00000001258	ENSVPAP00000007611	ADP ribosylation factor like GTPase 6 interacting protein 5.	Family with sequence similarity 241 member B.	0.725
ARL6IP5	RETREG3	ENSVPAP00000001258	ENSVPAP00000009611	ADP ribosylation factor like GTPase 6 interacting protein 5.	Reticulophagy regulator family member 3.	0.769
ARL6IP5	RTN1	ENSVPAP00000001258	ENSVPAP00000004852	ADP ribosylation factor like GTPase 6 interacting protein 5.	Reticulon 1.	0.808
ARL6IP5	RTN3	ENSVPAP00000001258	ENSVPAP00000011016	ADP ribosylation factor like GTPase 6 interacting protein 5.	Reticulon 3.	0.768
ARL6IP5	SLC1A1	ENSVPAP00000001258	ENSVPAP00000008548	ADP ribosylation factor like GTPase 6 interacting protein 5.	Solute carrier family 1 member 1.	0.795
ARL6IP5	VAMP4	ENSVPAP00000001258	ENSVPAP00000006905	ADP ribosylation factor like GTPase 6 interacting protein 5.	Vesicle associated membrane protein 4.	0.670
DERL1	ARL6IP5	ENSVPAP00000010971	ENSVPAP00000001258	Derlin 1.	ADP ribosylation factor like GTPase 6 interacting protein 5.	0.901
DERL1	DERL2	ENSVPAP00000010971	ENSVPAP00000011644	Derlin 1.	Derlin 2.	0.999
DERL1	RTN1	ENSVPAP00000010971	ENSVPAP00000004852	Derlin 1.	Reticulon 1.	0.550
DERL1	RTN3	ENSVPAP00000010971	ENSVPAP00000011016	Derlin 1.	Reticulon 3.	0.550
DERL2	ARL6IP5	ENSVPAP00000011644	ENSVPAP00000001258	Derlin 2.	ADP ribosylation factor like GTPase 6 interacting protein 5.	0.887
DERL2	DERL1	ENSVPAP00000011644	ENSVPAP00000010971	Derlin 2.	Derlin 1.	0.999
DERL2	RTN1	ENSVPAP00000011644	ENSVPAP00000004852	Derlin 2.	Reticulon 1.	0.634
DERL2	RTN3	ENSVPAP00000011644	ENSVPAP00000011016	Derlin 2.	Reticulon 3.	0.643
ENSVPAP00000000363	ARL6IP5	ENSVPAP00000000363	ENSVPAP00000001258	annotation not available	ADP ribosylation factor like GTPase 6 interacting protein 5.	0.755
ENSVPAP00000009322	ARL6IP5	ENSVPAP00000009322	ENSVPAP00000001258	annotation not available	ADP ribosylation factor like GTPase 6 interacting protein 5.	0.685