Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LHX8LIM homeobox 8. (311 aa)    
Predicted Functional Partners:
LDB1
LIM domain binding 1.
    
 0.929
ENSVPAP00000002144
annotation not available
   
 0.894
LDB2
LIM domain binding 2.
    
 0.871
ENSVPAP00000003396
annotation not available
    
   0.777
CRYZ
Crystallin zeta.
    
 
 0.728
TBR1
T-box brain transcription factor 1.
   
 
 0.629
SST
Somatostatin.
      
 0.615
CALB1
Calbindin 1.
    
 
 0.615
TRPS1
Transcriptional repressor GATA binding 1.
    
 0.611
ENSVPAP00000006772
annotation not available
      
 0.604
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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