STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RABGGTBRab geranylgeranyltransferase subunit beta. (331 aa)    
Predicted Functional Partners:
PTAR1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.996
CHM
CHM Rab escort protein.
    
 0.993
PTP4A2
Protein tyrosine phosphatase 4A2.
    
  0.985
RAB1A
RAB1A, member RAS oncogene family.
    
 0.980
ENSVPAP00000003976
annotation not available
    
  0.973
YKT6
YKT6 v-SNARE homolog.
    
 
 0.956
RAB19
RAB19, member RAS oncogene family.
    
 0.899
ENSVPAP00000009858
annotation not available
    
 0.892
GDI2
GDP dissociation inhibitor 2.
   
 0.877
RAB33B
RAB33B, member RAS oncogene family.
    
 0.868
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.