Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ZNF620Zinc finger protein 620. (423 aa)    
Predicted Functional Partners:
TRIM33
Tripartite motif containing 33.
    
  0.887
TRIM24
Tripartite motif containing 24.
    
  0.709
ENSVPAP00000003396
annotation not available
    
 0.582
MYSM1
Myb like, SWIRM and MPN domains 1.
    
  0.530
ARID4A
AT-rich interaction domain 4A.
    
 0.441
ARID4B
AT-rich interaction domain 4B.
    
 0.441
ENSVPAP00000004371
annotation not available
    
  0.439
MRPS6
Mitochondrial ribosomal protein S6.
    
  0.437
ENSVPAP00000010419
annotation not available
   
  0.435
MRPS9
Mitochondrial ribosomal protein S9.
    
  0.432
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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