Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
JOSD1Josephin domain containing 1. (201 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
    
  0.934
ENSVPAP00000002432
annotation not available
    
   0.771
ENSVPAP00000003243
annotation not available
     
 0.618
UBD
Ubiquitin D.
    
 0.617
ZFAND4
Zinc finger AN1-type containing 4.
    
 0.617
FAU
FAU ubiquitin like and ribosomal protein S30 fusion.
    
 0.617
OASL
2'-5'-oligoadenylate synthetase like.
    
 0.617
YOD1
YOD1 deubiquitinase.
      
 0.612
OTUD5
OTU deubiquitinase 5.
      
 0.553
USP47
Ubiquitin specific peptidase 47.
      
 0.523
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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