DDX25 protein (Vicugna pacos) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

DDX25

DEAD-box helicase 25. (401 aa)

Predicted Functional Partners:

ENSVPAP00000002952

0.912

ENSVPAP00000007278

0.860

NUP214

0.831

NUP88

0.809

ENSVPAP00000001380

0.803

XPO1

0.793

HYLS1

0.753

PIWIL2

0.741

ENSVPAP00000008533

0.734

ENSVPAP00000000437

0.731

Your Current Organism:

Vicugna pacos

NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX25	ENSVPAP00000000437	ENSVPAP00000001385	ENSVPAP00000000437	DEAD-box helicase 25.	annotation not available	0.731
DDX25	ENSVPAP00000001380	ENSVPAP00000001385	ENSVPAP00000001380	DEAD-box helicase 25.	annotation not available	0.803
DDX25	ENSVPAP00000002952	ENSVPAP00000001385	ENSVPAP00000002952	DEAD-box helicase 25.	annotation not available	0.912
DDX25	ENSVPAP00000007278	ENSVPAP00000001385	ENSVPAP00000007278	DEAD-box helicase 25.	annotation not available	0.860
DDX25	ENSVPAP00000008533	ENSVPAP00000001385	ENSVPAP00000008533	DEAD-box helicase 25.	annotation not available	0.734
DDX25	HYLS1	ENSVPAP00000001385	ENSVPAP00000001377	DEAD-box helicase 25.	HYLS1 centriolar and ciliogenesis associated.	0.753
DDX25	NUP214	ENSVPAP00000001385	ENSVPAP00000003439	DEAD-box helicase 25.	Nucleoporin 214.	0.831
DDX25	NUP88	ENSVPAP00000001385	ENSVPAP00000011643	DEAD-box helicase 25.	Nucleoporin 88.	0.809
DDX25	PIWIL2	ENSVPAP00000001385	ENSVPAP00000009849	DEAD-box helicase 25.	Piwi like RNA-mediated gene silencing 2.	0.741
DDX25	XPO1	ENSVPAP00000001385	ENSVPAP00000010659	DEAD-box helicase 25.	Exportin 1.	0.793
ENSVPAP00000000437	DDX25	ENSVPAP00000000437	ENSVPAP00000001385	annotation not available	DEAD-box helicase 25.	0.731
ENSVPAP00000000437	ENSVPAP00000002952	ENSVPAP00000000437	ENSVPAP00000002952	annotation not available	annotation not available	0.660
ENSVPAP00000000437	ENSVPAP00000008533	ENSVPAP00000000437	ENSVPAP00000008533	annotation not available	annotation not available	0.484
ENSVPAP00000000437	PIWIL2	ENSVPAP00000000437	ENSVPAP00000009849	annotation not available	Piwi like RNA-mediated gene silencing 2.	0.707
ENSVPAP00000001380	DDX25	ENSVPAP00000001380	ENSVPAP00000001385	annotation not available	DEAD-box helicase 25.	0.803
ENSVPAP00000001380	ENSVPAP00000002952	ENSVPAP00000001380	ENSVPAP00000002952	annotation not available	annotation not available	0.924
ENSVPAP00000001380	NUP214	ENSVPAP00000001380	ENSVPAP00000003439	annotation not available	Nucleoporin 214.	0.401
ENSVPAP00000002952	DDX25	ENSVPAP00000002952	ENSVPAP00000001385	annotation not available	DEAD-box helicase 25.	0.912
ENSVPAP00000002952	ENSVPAP00000000437	ENSVPAP00000002952	ENSVPAP00000000437	annotation not available	annotation not available	0.660
ENSVPAP00000002952	ENSVPAP00000001380	ENSVPAP00000002952	ENSVPAP00000001380	annotation not available	annotation not available	0.924