Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HDAC2Histone deacetylase 2. (470 aa)    
Predicted Functional Partners:
SIN3A
SIN3 transcription regulator family member A.
   
 0.998
SAP30
Sin3A associated protein 30.
    
 0.998
RB1
RB transcriptional corepressor 1.
   
 0.997
SMAD4
SMAD family member 4.
    
 0.992
KDM1A
Lysine demethylase 1A.
   
 0.991
ZFP42
ZFP42 zinc finger protein.
    
 0.989
ENSVPAP00000009161
annotation not available
    
 0.989
MTA3
Metastasis associated 1 family member 3.
   
 0.989
REST
RE1 silencing transcription factor.
    
 0.987
ENSVPAP00000005678
annotation not available
    
 0.987
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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