Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NYXNyctalopin. (303 aa)    
Predicted Functional Partners:
TRPM1
Transient receptor potential cation channel subfamily M member 1.
      
 0.879
ROBO4
Roundabout guidance receptor 4.
   
 0.863
ROBO1
Roundabout guidance receptor 1.
   
 0.863
ROBO2
Roundabout guidance receptor 2.
   
 0.863
STPG2
Sperm tail PG-rich repeat containing 2.
   
   0.779
ENSVPAP00000010426
annotation not available
    
 
 0.762
LRRC28
Leucine rich repeat containing 28.
  
 
 0.759
ENSVPAP00000006080
annotation not available
    
  0.723
ABL2
ABL proto-oncogene 2, non-receptor tyrosine kinase.
    
  0.723
LRR1
Leucine rich repeat protein 1.
  
 
 0.721
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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