Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PDE6GPhosphodiesterase 6G. (81 aa)    
Predicted Functional Partners:
PDE6A
Phosphodiesterase 6A.
   
 0.998
PDE6C
Phosphodiesterase 6C.
   
 0.984
RGS9
Regulator of G protein signaling 9.
    
 0.958
RHO
Rhodopsin.
   
  
 0.915
GNAT3
G protein subunit alpha transducin 3.
   
 0.893
GNAT2
G protein subunit alpha transducin 2.
   
 0.893
ENSVPAP00000004756
annotation not available
   
 0.823
PDE10A
Phosphodiesterase 10A.
   
 0.810
PDE5A
Phosphodiesterase 5A.
   
 0.810
PDE3A
Phosphodiesterase 3A.
    
 0.758
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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