Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000001450annotation not available (476 aa)    
Predicted Functional Partners:
NDC1
NDC1 transmembrane nucleoporin.
      
 0.923
TMEM209
Transmembrane protein 209.
      
 0.923
SEH1L
SEH1 like nucleoporin.
    
   0.789
LRRC19
Leucine rich repeat containing 19.
      
 0.759
TMEM70
Transmembrane protein 70.
      
 0.749
RHBDD1
Rhomboid domain containing 1.
      
 0.747
CKAP4
Cytoskeleton associated protein 4.
      
 0.741
EXD2
Exonuclease 3'-5' domain containing 2.
      
 0.732
TRMT11
tRNA methyltransferase 11 homolog.
      
 0.732
ENSVPAP00000010225
annotation not available
      
 0.732
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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