Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UBE2BUbiquitin conjugating enzyme E2 B. (137 aa)    
Predicted Functional Partners:
RAD18
RAD18 E3 ubiquitin protein ligase.
    
 0.971
RNF20
Ring finger protein 20.
    
 0.965
ENSVPAP00000005957
annotation not available
    
 0.960
PCNA
Proliferating cell nuclear antigen.
    
 0.949
TRIP12
Thyroid hormone receptor interactor 12.
    
 0.944
UBR2
Ubiquitin protein ligase E3 component n-recognin 2.
    
 0.929
UBR1
Ubiquitin protein ligase E3 component n-recognin 1.
    
 0.894
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.890
RPS27A
Ribosomal protein S27a.
    
 0.888
ENSVPAP00000001226
annotation not available
   
 0.843
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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