STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLCO6A1Solute carrier organic anion transporter family member 6A1. (705 aa)    
Predicted Functional Partners:
RTL4
Retrotransposon Gag like 4.
      
 0.824
CATSPERE
Catsper channel auxiliary subunit epsilon.
    
   0.733
LHFPL1
LHFPL tetraspan subfamily member 1.
   
  
 0.728
ENSVPAP00000010607
annotation not available
   
  
 0.719
UBE4B
Ubiquitination factor E4B.
      
 0.652
ENSVPAP00000008239
annotation not available
      
 0.610
ENSVPAP00000011271
annotation not available
      
 0.593
SLC22A2
Solute carrier family 22 member 2.
   
  
 0.587
SLC22A5
Solute carrier family 22 member 5.
   
  
 0.571
SLC22A3
Solute carrier family 22 member 3.
   
  
 0.569
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.