Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
GIN1Gypsy retrotransposon integrase 1. (522 aa)    
Predicted Functional Partners:
LIN52
Lin-52 DREAM MuvB core complex component.
    
 0.749
SUGP2
SURP and G-patch domain containing 2.
      
 0.746
UBXN8
UBX domain protein 8.
      
 0.715
PGBD1
piggyBac transposable element derived 1.
    
 
 0.703
FANCM
FA complementation group M.
    
 0.701
THAP9
THAP domain containing 9.
    
 
 0.698
HARBI1
Harbinger transposase derived 1.
      
 0.685
ENSVPAP00000005368
annotation not available
    
 
 0.683
POGK
Pogo transposable element derived with KRAB domain.
      
 0.661
RAG1
Recombination activating 1.
      
 0.658
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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