Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SLIRPSRA stem-loop interacting RNA binding protein. (108 aa)    
Predicted Functional Partners:
ENSVPAP00000008367
annotation not available
   
 0.997
MRPS15
Mitochondrial ribosomal protein S15.
   
 
 0.916
NDUFB4
NADH:ubiquinone oxidoreductase subunit B4.
   
   0.873
MRPS18C
Mitochondrial ribosomal protein S18C.
   
 
 0.864
MRPL48
Mitochondrial ribosomal protein L48.
   
 
 0.860
MRPL46
Mitochondrial ribosomal protein L46.
   
 
 0.860
ENSVPAP00000006933
annotation not available
   
 0.858
MRPL52
Mitochondrial ribosomal protein L52.
   
   0.858
NDUFC1
NADH:ubiquinone oxidoreductase subunit C1.
   
    0.856
ENSVPAP00000009358
annotation not available
   
   0.853
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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