Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LAMP2Lysosomal associated membrane protein 2. (388 aa)    
Predicted Functional Partners:
TMEM192
Transmembrane protein 192.
    
 0.984
EEA1
Early endosome antigen 1.
      
 0.923
HIF1A
Hypoxia inducible factor 1 subunit alpha.
    
 
 0.917
ENSVPAP00000010752
annotation not available
     
0.902
SNCA
Synuclein alpha.
   
 
 0.862
CD63
CD63 molecule.
   
 0.831
UCHL3
Ubiquitin C-terminal hydrolase L3.
    
 
 0.788
ENSVPAP00000001083
annotation not available
    
 0.776
ATG5
Autophagy related 5.
      
 0.770
ENSVPAP00000001427
annotation not available
   
 
 0.753
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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