Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSVPAP00000001677annotation not available (267 aa)    
Predicted Functional Partners:
COL25A1
Collagen type XXV alpha 1 chain.
     
 0.830
SMAGP
Small cell adhesion glycoprotein.
      
 0.760
ENSVPAP00000008415
annotation not available
   
  
 0.687
ENSVPAP00000001683
annotation not available
      
 0.657
ENSVPAP00000002909
annotation not available
      
 0.657
COL21A1
Collagen type XXI alpha 1 chain.
     
 0.631
SCIN
Scinderin.
      
 0.630
COL28A1
Collagen type XXVIII alpha 1 chain.
    
 0.630
TTC28
Tetratricopeptide repeat domain 28.
    
 
 0.618
ENSVPAP00000000769
annotation not available
    
   0.617
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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