Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SGCBSarcoglycan beta. (307 aa)    
Predicted Functional Partners:
SSPN
Sarcospan.
    
 0.992
SGCD
Sarcoglycan delta.
    
 0.989
ENSVPAP00000006250
annotation not available
    
 0.982
SGCE
Sarcoglycan epsilon.
    
 0.963
ENSVPAP00000008442
annotation not available
    
 0.946
SGCZ
Sarcoglycan zeta.
    
 0.853
UTRN
Utrophin.
    
 0.723
DMD
Dystrophin.
    
 0.723
DTNB
Dystrobrevin beta.
    
 0.683
DTNA
Dystrobrevin alpha.
    
 0.683
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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