Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HELBDNA helicase B. (979 aa)    
Predicted Functional Partners:
RPA1
Replication protein A1.
    
 
 0.969
RPA3
Replication protein A3.
    
 
 0.966
FANCM
FA complementation group M.
   
 
 0.937
PCNA
Proliferating cell nuclear antigen.
  
 
 0.883
ASF1A
Anti-silencing function 1A histone chaperone.
   
 
 0.858
DNA2
DNA replication helicase/nuclease 2.
   
 
 0.858
RPA4
Replication protein A4.
   
 
 0.839
B2M
Beta-2-microglobulin.
   
 
 0.839
WRN
WRN RecQ like helicase.
  
 
 0.827
ENSVPAP00000002676
annotation not available
  
 
 0.778
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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