Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM4RNA binding motif protein 4. (357 aa)    
Predicted Functional Partners:
RBM11
RNA binding motif protein 11.
    
 
 0.757
RSRC1
Arginine and serine rich coiled-coil 1.
   
 0.739
EIF4E2
Eukaryotic translation initiation factor 4E family member 2.
    
 
 0.702
NOP58
NOP58 ribonucleoprotein.
   
 
 0.691
PTBP3
Polypyrimidine tract binding protein 3.
    
 0.679
SRSF3
Serine and arginine rich splicing factor 3.
    
 0.662
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.662
ENSVPAP00000010392
annotation not available
   
 0.648
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
 0.636
SRP54
Signal recognition particle 54.
    
 
 0.633
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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