Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TUT7Terminal uridylyl transferase 7. (1489 aa)    
Predicted Functional Partners:
TUT4
Terminal uridylyl transferase 4.
   
 0.975
LIN28A
Lin-28 homolog A.
    
 0.957
ENSVPAP00000006015
annotation not available
    
   0.831
RPL3
Ribosomal protein L3.
    
   0.782
DIS3L2
DIS3 like 3'-5' exoribonuclease 2.
    
 
 0.757
PAPOLG
poly(A) polymerase gamma.
   
 
 0.704
LIN28B
Lin-28 homolog B.
    
 0.661
DIS3
DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease.
    
 
 0.622
CPSF2
Cleavage and polyadenylation specific factor 2.
   
 0.619
CPSF3
Cleavage and polyadenylation specific factor 3.
    
 0.616
Your Current Organism:
Vicugna pacos
NCBI taxonomy Id: 30538
Other names: Lama guanicoe pacos, Lama pacos, V. pacos, alpaca
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